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1

Fuzzy complexes: polymorphism and structural disorder in protein–protein interactions

Peter Tompa, Monika Fuxreiter

Journal:

Trends in Biochemical Sciences

Year:

2008

Language:

english

File:

PDF, 230 KB

english, 2008

2

Malleable machines take shape in eukaryotic transcriptional regulation

Fuxreiter, Monika, Tompa, Peter, Simon, István, Uversky, Vladimir N, Hansen, Jeffrey C, Asturias, Francisco J

Journal:

Nature Chemical Biology

Year:

2008

Language:

english

File:

PDF, 747 KB

english, 2008

3

Dynamic protein–DNA recognition: beyond what can be seen

Monika Fuxreiter, Istvan Simon, Sarah Bondos

Journal:

Trends in Biochemical Sciences

Year:

2011

Language:

english

File:

PDF, 703 KB

english, 2011

4

Preformed Structural Elements Feature in Partner Recognition by Intrinsically Unstructured Proteins

Monika Fuxreiter, István Simon, Peter Friedrich, Peter Tompa

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 347 KB

english, 2004

5

[Advances in Experimental Medicine and Biology] Fuzziness Volume 725 || Structural Disorder and Protein Elasticity

Fuxreiter, Monika, Tompa, Peter

Year:

2012

Language:

english

File:

PDF, 910 KB

english, 2012

6

Disordered Proteinaceous Machines

Fuxreiter, Monika, Tóth-Petróczy, Ágnes, Kraut, Daniel A., Matouschek, Andreas T., Lim, Roderick Y. H., Xue, Bin, Kurgan, Lukasz, Uversky, Vladimir N.

Journal:

Chemical Reviews

Year:

2014

Language:

english

File:

PDF, 14.07 MB

english, 2014

7

Classification of Intrinsically Disordered Regions and Proteins

van der Lee, Robin, Buljan, Marija, Lang, Benjamin, Weatheritt, Robert J., Daughdrill, Gary W., Dunker, A. Keith, Fuxreiter, Monika, Gough, Julian, Gsponer, Joerg, Jones, David T., Kim, Philip M., Kri

Journal:

Chemical Reviews

Year:

2014

Language:

english

File:

PDF, 21.64 MB

english, 2014

8

The Structure and Dynamics of Higher-Order Assemblies: Amyloids, Signalosomes, and Granules

Wu, Hao, Fuxreiter, Monika

Journal:

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

9

Simultaneous quantification of protein order and disorder

Sormanni, Pietro, Piovesan, Damiano, Heller, Gabriella T, Bonomi, Massimiliano, Kukic, Predrag, Camilloni, Carlo, Fuxreiter, Monika, Dosztanyi, Zsuzsanna, Pappu, Rohit V, Babu, M Madan, Longhi, Sonia,

Journal:

Nature Chemical Biology

Year:

2017

Language:

english

File:

PDF, 2.51 MB

english, 2017

10

Editorial overview: Dynamic protein interactions — from complexes to molecular machines

Fuxreiter, Monika, Panchenko, Anna

Journal:

Current Opinion in Structural Biology

Year:

2019

Language:

english

File:

PDF, 188 KB

english, 2019

11

Role of electrostatics at the catalytic metal binding site in xylose isomerase action: Ca2+-inhibition and metal competence in the double mutant D254E/D256E

Monika Fuxreiter, Zsolt Böcskei, Anikó Szeibert, Erika Szabó, Géza Dallmann, Gábor Náray-Szabó, Bence Asbóth

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 195 KB

english, 1997

12

Close encounters of the third kind: disordered domains and the interactions of proteins

Peter Tompa, Monika Fuxreiter, Christopher J. Oldfield, Istvan Simon, A. Keith Dunker, Vladimir N. Uversky

Journal:

Year:

2009

Language:

english

File:

PDF, 429 KB

english, 2009

13

BioEssays 3/2009

Peter Tompa, Monika Fuxreiter, Christopher J. Oldfield, Istvan Simon, A. Keith Dunker, Vladimir N. Uversky

Journal:

Year:

2009

File:

PDF, 194 KB

2009

14

Conformation and Self-Association of a Hybrid Peptide of Cecropin A and Melittin with Improved Antibiotic Activity

Imma Fernández, Josep Ubach, Monika Fuxreiter, José Manuel Andreu, David Andreu, Miquel Pons

Journal:

Chemistry - A European Journal

Year:

1996

Language:

english

File:

PDF, 940 KB

english, 1996

15

Noncovalent Cross-Links in Context with Other Structural and Functional Elements of Proteins.

Eva Tuedos, Andras Fiser, Agnes Simon, Zsuzsanna Dosztanyi, Monika Fuxreiter, Csaba Magyar, Istvan Simon

Journal:

Year:

2004

File:

PDF, 53 KB

2004

16

An EcoRI–RsrI chimeric restriction endonuclease retains parental sequence specificity

Tungalag Chuluunbaatar, Tetiana Ivanenko-Johnston, Mónika Fuxreiter, Ruslan Meleshko, Tamás Raskó, István Simon, Joseph Heitman, Antal Kiss

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2007

Language:

english

File:

PDF, 1.03 MB

english, 2007

17

Flexibility of prolyl oligopeptidase: Molecular dynamics and molecular framework analysis of the potential substrate pathways

Monika Fuxreiter, Csaba Magyar, Tünde Juhász, Zoltán Szeltner, László Polgár, István Simon

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 843 KB

english, 2005

18

Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBP

Iván Solt, Csaba Magyar, István Simon, Peter Tompa, Monika Fuxreiter

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 184 KB

english, 2006

19

Active site residue involvement in monoamine or diamine oxidation catalysed by pea seedling amine oxidase

Maria Luisa Di Paolo, Michele Lunelli, Monika Fuxreiter, Adelio Rigo, Istvan Simon, Marina Scarpa

Journal:

Year:

2011

Language:

english

File:

PDF, 531 KB

english, 2011

20

Protein stability indicates divergent evolution of PD-(D/E)XK type II restriction endonucleases

Monika Fuxreiter, István Simon

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 72 KB

english, 2002

21

[Advances in Experimental Medicine and Biology] Fuzziness Volume 725 || Intrinsic Protein Flexibility in Regulation of Cell Proliferation: Advantages for Signaling and Opportunities for Novel Therapeutics

Fuxreiter, Monika, Tompa, Peter

Year:

2012

Language:

english

File:

PDF, 487 KB

english, 2012

22

Interactions via intrinsically disordered regions: What kind of motifs?

Rita Pancsa, Monika Fuxreiter

Journal:

Year:

2012

Language:

english

File:

PDF, 1.26 MB

english, 2012

23

Fuzzy interactome: the limitations of models in molecular biology

Monika Fuxreiter, Peter Tompa

Journal:

Trends in Biochemical Sciences

Year:

2009

Language:

english

File:

PDF, 64 KB

english, 2009

24

Origin of the Catalytic Power of Acetylcholinesterase: Computer Simulation Studies

Fuxreiter, Monika, Warshel, Arieh

Journal:

Journal of the American Chemical Society

Year:

1998

Language:

english

File:

PDF, 156 KB

english, 1998

25

On the Divalent Metal Ion Dependence of DNA Cleavage by Restriction Endonucleases of the EcoRI Family

Vera Pingoud, Wolfgang Wende, Peter Friedhoff, Monika Reuter, Jürgen Alves, Albert Jeltsch, Letif Mones, Monika Fuxreiter, Alfred Pingoud

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.48 MB

english, 2009

26

Tissue-Specific Splicing of Disordered Segments that Embed Binding Motifs Rewires Protein Interaction Networks

Marija Buljan, Guilhem Chalancon, Sebastian Eustermann, Gunter P. Wagner, Monika Fuxreiter, Alex Bateman, M. Madan Babu

Journal:

Year:

2012

Language:

english

File:

PDF, 1.33 MB

english, 2012

27

Role of Base Flipping in Specific Recognition of Damaged DNA by Repair Enzymes

Monika Fuxreiter, Ning Luo, Pál Jedlovszky, István Simon, Roman Osman

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 529 KB

english, 2002

28

Malleable machines in transcription regulation: the Mediator complex

Tóth-Petróczy, Ágnes, Simon, István, Oldfield, Christopher, Takagi, Yuichiro, Dunker, Keith, Uversky, Vladimir, Fuxreiter, Monika

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 40 KB

english, 2009

29

Interfacial Water as a “Hydration Fingerprint” in the Noncognate Complex of BamHI

Fuxreiter, Monika, Mezei, Mihaly, Simon, István, Osman, Roman

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 153 KB

english, 2005

30

[Advances in Experimental Medicine and Biology] Fuzziness Volume 725 || Fuzzy Complexes: A More Stochastic View of Protein Function

Fuxreiter, Monika, Tompa, Peter

Year:

2012

Language:

english

File:

PDF, 487 KB

english, 2012

31

[Advances in Experimental Medicine and Biology] Fuzziness Volume 725 || The Measles Virus NTAIL-XD Complex: An Illustrative Example of Fuzziness

Fuxreiter, Monika, Tompa, Peter

Year:

2012

File:

PDF, 872 KB

2012

32

Alternative splicing of intrinsically disordered regions and rewiring of protein interactions

Buljan, Marija, Chalancon, Guilhem, Dunker, A Keith, Bateman, Alex, Balaji, S, Fuxreiter, Monika, Babu, M Madan

Journal:

Current Opinion in Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.02 MB

english, 2013

33

Disordered Tails of Homeodomains Facilitate DNA Recognition by Providing a Trade-Off between Folding and Specific Binding

Tóth-Petróczy, Ágnes, Simon, Istvan, Fuxreiter, Monika, Levy, Yaakov

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 722 KB

english, 2009

34

Electrostatic versus Nonelectrostatic Effects in DNA Sequence Discrimination by Divalent Ions Mg 2+ and Mn 2+

Solt, Iván, Simon, István, Császár, Attila G., Fuxreiter, Monika

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 174 KB

english, 2007

35

The role of reorganization energy in rational enzyme design

Fuxreiter, Monika, Mones, Letif

Journal:

Current Opinion in Chemical Biology

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

36

Fuzzy Complexes: Polymorphism And Structural Disorder In Protein-protein Interactions

Fuxreiter, Monika, Tompa, Peter

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 37 KB

english, 2009

37

Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism

Mones, Letif, Simon, István, Fuxreiter, Monika

Journal:

Biological Chemistry

Year:

2007

Language:

english

File:

PDF, 142 KB

english, 2007

38

Probing the Two-Metal Ion Mechanism in the Restriction Endonuclease BamHI †

Mones, Letif, Kulhánek, Petr, Florián, Jan, Simon, István, Fuxreiter, Monika

Journal:

Year:

2007

Language:

english

File:

PDF, 184 KB

english, 2007

39

Evaluating Boundary Dependent Errors in QM/MM Simulations

Solt, Iván, Kulhánek, Petr, Simon, István, Winfield, Steven, Payne, Mike C., Csányi, Gábor, Fuxreiter, Monika

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 1.62 MB

english, 2009

40

Probing the General Base Catalysis in the First Step of Bam HI Action by Computer Simulations †

Fuxreiter, Monika, Osman, Roman

Journal:

Year:

2001

Language:

english

File:

PDF, 89 KB

english, 2001

41

The Energy Gap as a Universal Reaction Coordinate for the Simulation of Chemical Reactions

Mones, Letif, Kulhánek, Petr, Simon, István, Laio, Alessandro, Fuxreiter, Monika

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 1023 KB

english, 2009

42

Identification of a specific one amino acid change in recombinant human transglutaminase 2 that regulates its activity and calcium sensitivity

Kanchan, Kajal, Ergülen, Elvan, Király, Robert, Simon‑Vecsei, Zsófia, Fuxreiter, Mónika, Fésüs, László

Journal:

Biochemical Journal

Year:

2013

Language:

english

File:

PDF, 1.23 MB

english, 2013

43

Role of Active Site Residues in the Glycosylase Step of T4 Endonuclease V. Computer Simulation Studies on Ionization States †

Fuxreiter, Monika, Warshel, Arieh, Osman, Roman

Journal:

Year:

1999

Language:

english

File:

PDF, 206 KB

english, 1999

44

Correction to Disordered Proteinaceous Machines

Fuxreiter, Monika, Tóth-Petróczy, Ágnes, Kraut, Daniel A., Matouschek, Andreas, Lim, Roderick Y. H., Xue, Bin, Kurgan, Lukasz, Uversky, Vladimir N.

Journal:

Chemical Reviews

Year:

2015

File:

PDF, 167 KB

2015

45

Physiological, pathological, and structural implications of non-enzymatic protein–protein interactions of the multifunctional human transglutaminase 2

Kanchan, Kajal, Fuxreiter, Mónika, Fésüs, László

Journal:

Cellular and Molecular Life Sciences

Year:

2015

Language:

english

File:

PDF, 1.71 MB

english, 2015

46

What’s in a name? Why these proteins are intrinsically disordered

Dunker, A. Keith, Babu, M. Madan, Barbar, Elisar, Blackledge, Martin, Bondos, Sarah E., Dosztányi, Zsuzsanna, Dyson, H. Jane, Forman-Kay, Julie, Fuxreiter, Monika, Gsponer, Jörg, Han, Kyou-Hoon, Jones

Journal:

Intrinsically Disordered Proteins

Year:

2013

Language:

english

File:

PDF, 333 KB

english, 2013

47

Malleable Machines in Transcription Regulation: The Mediator Complex

Tóth-Petróczy, Ágnes, Oldfield, Christopher J., Simon, István, Takagi, Yuichiro, Dunker, A. Keith, Uversky, Vladimir N., Fuxreiter, Monika, Jacobson, Matthew P.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 742 KB

english, 2008

48

Fuzzy complexes: specific binding without complete folding

Sharma, Rashmi, Raduly, Zsolt, Miskei, Marton, Fuxreiter, Monika

Journal:

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

49

Fuzziness endows viral motif-mimicry

Duro, Norbert, Miskei, Marton, Fuxreiter, Monika

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

50

Molecular modelling of xylose isomerase catalysis: the role of electrostatics and charge transfer to metals

Fuxreiter, Monika, Farkas, Ödön, Náray-Szabó, Gábor

Journal:

Protein Engineering Design and Selection

Year:

1995

Language:

english

File:

PDF, 686 KB

english, 1995